Mission 3 was an altered representation of a fragmented genetic memory.
- Pirate 2: They went through here. We should be quiet; they can't be far ahead.
- Pirate 1: Where d'ya suppose that map leads? I got a bad feeling...
The pirates made their way deeper into the caverns, evading or eliminating any soldiers from the British army they encountered until they until they reached the exit, which was blocked by Captain Stewart and two redcoats.
- Captain Stewart: Well hello! More rats looking for crumbs have we? I am afraid you will have to keep on crawling for now, vermin. Deal with them!
Captain Stewart walked out the cave's back entrance and left his soldiers to deal, though they were swiftly outmatched and defeated. Victorious, the pirates gathered at the mouth of the exit.
- Pirate 2: Finally, bit of fresh sea air. Let's find where that officer has scarpered.
The crew of the Sea Dog's Bite tracked Captain Stewart through the caves, but were unable to prevent his escape.